Publications

20. N. Welkenhuysen, J. Borgqvist, M. Backman, L. Bendrioua, M. Goksör, C. B Adiels, M. Cvijovic, S. Hohmann, Single-cell study links metabolism with nutrient signaling and reveals sources of variability, BMC systems Biology (2017)

19. J. Borgqvist, R. Dainese, M. Cvijovic  Systems biology of ageing, Systems Biology Wiley Biotechnology  (2016)

18. M. Cvijovic, T.Hofer, J. Acimovic, L. Alberghina, E. Almaas, D. Besozzi, A. Blomberg, T. Bretschneider, M. Cascante, O. Collin, P. de Atauri, C. Depner, R. Dickinson, M. Dobrzynski, C. Fleck, J. Garcia-Ojalvo, D. Gonze, J. Hahn, H. M. Hess, S. Hollmann, M. Krantz, U. Kummer, T. Lundh, G. Martial, V. Martins dos Santos, A. Mauer-Oberthur, B. Regierer, B. Skene, E. Stalidzans, J. Stelling, B. Teusink, C. T. Workman, S. Hohmann, Strategies for structuring interdisciplinary education in Systems Biology An European perspective, Nature Systems Biology and Applications (2016)

17. T. Österlund, M. Cvijovic, E. Kristiansson, Integrative analysis of omics data, Systems Biology Wiley Biotechnology  (2016)

16. X. Yang, Y. Shen, E. Garre, X. Hao, D. Krumlinde, M. Cvijovic, C.Arens, T. Nyström, B. Liu, P. Sunnerhagen, Stress granule-defective mutants deregulate stress responsive transcripts, PLoS Genet. Vol 10(11) (2014)

15. S. Jia, Q. Yang, X. Hao, L. Larsson, J. Yang, X. Zhu, S. Malmgren-Hill, D. Höglund, M. Cvijovic, J. Fernandez-Rodriguez, J. Grantham, C.M. Gustafsson, B. Liu, T.Nyström, Essential genes of the SIR2 genetic interaction network required for asymmetrical inheritance of protein aggregates, PLoS Genetics Vol 10 (7)(2014)

14. L. Bendrioua, M. Smedh, J. Almquist, M. Cvijovic, M. Jirstrand, M. Goksor, C. B. Adiels, S. Hohamnn, Yeast AMP-Activated Protein Kinase Monitors Glucose Concentration Changes as well as Absolute Glucose Levels, J. Biol. Chem 289(18):12863-75(2014)

13. M.Cvijovic, J. Almquist, J. Hagmar, S. Hohmann, H.-M. Kaltenbach, E. Klipp, M. Krantz, P. Mendes, S. Nelander, J. Nielsen, A. Pagnani, N.Przulj, A. Raue, J. Stelling, S. Stoma, F. Tobin, J. A. H. Wodke, R. Zecchina, M. Jirstrand Bridging the gaps in systems biology, Molecular Genetics and Genomics (2014)

12. J. Almquist, M. Cvijovic, V. Hatzimanikatis, J.Nielsen, M. Jirstrand, Kinetic Models in Industrial Biotechnology – Improving Cell Factory Performance, Metabolic Engineering 24C:38-60 (2014)

11. K. Wanichthanarak, M. Cvijovic, A. Molt, D. Petranovic yApoptosis: Yeast Apoptosis Database, Database (2013)

10. M. Hernebring, Å. Fredriksson, M. Liljevald, M. Cvijovic, K. Norrman, J. Wiseman, H. Semb, T. Nyström Removal of damaged proteins during ES cell fate specification requires the proteasome activator PA28, Nature Scientific Reports 3: 1381 (2013)

9. L. Kazemzadeh, M. Cvijovic, D. Petranovic Boolean model of yeast apoptosis as a tool to study yeast and human apoptotic regulations, Front Physiol 3:446 (2012)

8. F. Cuklev, J. Fick, M. Cvijovic, E. Kristiansson, L. Förlin, D.G.J. Larsson Does ketoprofen or diclofenac pose the lowest risk to fish? J Hazard Mater, 229-230:100-6 (2012)

7. F. Cuklev, L. Gunnarsson, M. Cvijovic, E. Kristiansson, C. Rutgersson, B. Björlenius D.G.J. Larsson Global hepatic gene expression in rainbow trout exposed to sewage effluents: A comparison of different sewage treatment technologies, Science of the Total Enviroment, 427-428:106-14 (2012)

6. M. Cvijovic, S. Velasco Bordel, J. Nielsen Mathematical Models of Cell Factories: Moving towards the core of Industrial Biotechnology, Microbial Biotechnology (2011)

5. M. Cvijovic, R.Olivares–Hernández, R. Agren, N.Dahr, W. Vongsangnak, I. Nookaew, K. R. Paril, J. Nielsen BioMet Toolbox: genome-wide analysis of metabolism, Nucleic Acid Research, NAR vol 38 (2010)

4. N. Erjavec*, M. Cvijovic, E. Klipp, T. Nyström Selective benefits of damage partitioning in unicellular systems; effects on robustness, fitness and aging, PNAS vol 105 (2008) (Recommended by Faculty of 1000)

3. M. Cvijovic, H. Soueidan*, D. J. Sherman, E. Klipp, M. Nikolski Exploratory simulation of Cell Ageing Using Hierarchical Models, Genome Informatics 21:114-25 (2008)

2. M. Cvijovic, D.Dalevi, E. Bilsland, G.J.L. Kemp, P. Sunnerhagen, Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation, BMC Bioinformatics 8:295 (2007)

1. Selpi, C.H. Bryant, G.J.L. Kemp, M. Cvijovic, A First Step towards Learning which uORFs Regulate Gene Expression,Journal of Integrative Bioinformatics, 3(2) (2006)